Greencircrna
WebJan 1, 2024 · Constructing CircRNA-miRNA-mRNA Regulatory Networks by Using GreenCircRNA Database. Jingjing Zhang, Ruiqi Liu, Guanglin Li Methods in Molecular … WebTable 2 Comparison of predicted ath-miR161 network information among evaluated databases. From: Methods for Predicting CircRNA–miRNA–mRNA Regulatory Networks: GreenCircRNA and PlantCircNet Databases as Study Cases
Greencircrna
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WebGreenCircRNA(v1.0) is the most comprehensive database containing 213,494 circRNA informations from over 4100 RNA-seq datasets across 69 different species. Based on these candidate circRNAs, we futher predicted them acting as miRNA decoys and their potential networks involving circRNA-miRNA-mRNA in the corresponding species. WebJul 1, 2024 · GreenCircRNA is a recently published database focused on circRNAs from 69 plant species that act as decoys of miRNA . Moreover, this repository includes basic information about the circRNAs , including their genomic localization, host gene and basal expression values. Besides ...
WebJul 1, 2024 · Here, taking Arabidopsis thaliana as an example, we firstly show the method for identification of circRNA and construction of circRNA–miRNA–mRNA networks based … WebIntroduction. The formation of chronic intractable wounds is a common, high incidence complication of diabetes that can be a burden and inconvenience for recipients (1, 2).Although many studies have been carried out on chronic intractable wound disease and pathogenicity (3, 4), few studies have focussed on the gene regulation of chronic …
WebGreenCircRNA. A database for plant circRNAs that act as miRNA decoys. Circular RNAs (circRNAs) are a novel type of RNAs that form covalently closed loop structures with neither 5'- 3' polarities nor polyadenylated ... WebSelect search scope, currently: catalog all catalog, articles, website, & more in one search; catalog books, media & more in the Stanford Libraries' collections; articles+ journal articles & other e-resources
WebJun 8, 2024 · Moreover, the existence of the plant conserved circRNAs was validated by mapping them to the GreenCircRNA dataset using blastn with e-value < 1E-6, which confirmed a total of 295 (35.9%) conserved ...
WebFeb 14, 2024 · The functional study on circRNAs has been increasing in the past decade due to its important roles in micro RNA sponge, protein coding, the initiation, and progression of diseases. The study of circRNA functions depends on the full-length sequences of circRNA, and current sequence assembly methods based on short reads … the pod restaurant san antonio txWebJan 1, 2024 · Europe PMC is an archive of life sciences journal literature. the pod restaurant gretna vaWebJul 1, 2024 · Due to many options to predict circRNA–miRNA–mRNA network, we selected the GreenCircRNA, and PlantCircNet databases to present below, with notes to indicate … the podride for saleWebNov 11, 2024 · GreenCircRNA is the first database for the prediction of circRNAs that act as miRNA decoys and contains the largest number of plant species. Database URL: … sideways on a shipWebContents: Identification and Characterization of Plant Circular RNAs -- Experimental Strategies for Studying the Function of Plant circRNAs -- Generation of Transgenic Rice Expressing circRNA and its Functional Characterization -- Identification of Circular RNAs by Multiple Displacement Amplification and their Involvement in Plant Development ... sideways option strategiesWebHere, taking Arabidopsis thaliana as an example, we firstly show the method for identification of circRNA and construction of circRNA-miRNA-mRNA networks based on GreenCircRNA database, then perform a case study for identifying circRNAs and inferring their function in A. thaliana. Our method can be easily extended and applied to other plants. the pods blue watersWebJan 9, 2024 · A total of eight plant species are represented in PlantCircNet, 21 in PlantcircBase 7.0, two in CropCircDB, five in LeafcircBase, seven in circFunBase, one in AtCircDB, and 69 in GreenCircRNA. In these databases, circRNA-related information, including their positions in the genome, host genes, and bioinformatics tools, are provided. sideways orange triangle sign meaning